Your Complete Q4 & Year-End Payroll Checklist: What Every Business Needs to Prepare Before the New Year
As the year winds down, Q4 brings a rush of deadlines, compliance tasks, tax updates, and HR responsibilities that can easily overwhelm even the most organized employers. From verifying employee data to preparing W-2s and ACA forms, year-end is a critical period where small mistakes can turn into costly issues.
But with the right preparation — and the right payroll partner — Q4 can go from stressful to streamlined. Here’s a comprehensive, expanded breakdown of everything businesses should focus on before heading into a new year.
🎯 1. Verify Employee Information Before W-2 Season
W-2 errors are one of the most common (and easily preventable) year-end issues. A single incorrect Social Security number or outdated address can trigger IRS notices, returned forms, and frustration for employees.
Data you must confirm includes:
Legal names: Must match Social Security records exactly
SSNs: Incorrect SSNs can delay tax filings
Addresses: Many employees move during the year
Marital status + withholdings: Ensure W-4s are up to date
Work locations: Critical for state/local tax withholding
Birthdates: Required for certain benefits and tax calculations
Why this matters
Any mistake on the W-2 can require a W-2C correction, reprints, and potential IRS penalties — all of which slow down tax season.
How Aquila helps
isolved’s employee self-service allows team members to update their own personal information securely, reducing your administrative workload.
💸 2. Review All Taxable Fringe Benefits
Many employers forget to include taxable fringe benefits in employee wages throughout the year. Q4 is your last chance to correct this before W-2s are finalized.
Common fringe benefits that MUST be reported include:
Company vehicle personal use
Group-term life insurance over $50,000
Gift cards of any amount
Holiday bonuses
Non-accountable business reimbursements
Employer-paid moving/relocation costs (non-qualified)
Wellness incentives (depending on structure)
Why this matters
If fringe benefits aren’t added to payroll before year-end:
Employees receive incorrect W-2s
Employers underreport taxable wages
IRS penalties or audits may follow
Example
If an employee uses a company vehicle for personal errands, the value of that usage must be calculated (often using the IRS Annual Lease Value method) and added to their taxable wages before year-end.
📑 3. Prepare for Year-End Forms: W-2, 1099, and ACA Reporting
This is the biggest compliance area of Q4.
W-2 Forms
These must reflect:
Total taxable wages
Taxes withheld
Benefit deductions
Fringe benefits
Retirement contributions
Even small errors cause major delays.
1099 NEC & MISC
For contractors paid $600+:
Confirm tax ID numbers
Ensure W-9s are collected
Reconcile total payments
Incorrect contractor filings are an IRS red flag.
ACA Forms (1094/1095)
Required for:
Applicable Large Employers (50+ full-time equivalents)
Any employer with a level-funded or self-funded plan
Penalties can exceed thousands per form if reporting is incorrect — making ACA compliance a top Q4 priority.
How Aquila helps
We automate form creation, filing, and employee distribution through isolved, removing manual work and lowering your risk of IRS notices.
🧾 4. Audit PTO Balances and Year-End Policies
Holiday season = PTO season. Before year-end, companies must ensure that all PTO balances are accurate and handled according to policy and state law.
Key items to review:
Accrual balances for accuracy
Carryover or “use-it-or-lose-it” rules
State-mandated paid sick leave
Payout requirements upon separation
Negative balances (and how they'll be handled)
Blackout dates during the holidays
Why this matters
Incorrect balances can lead to wage claims — especially in states where PTO is treated as earned wages.
Example
If an employee is owed a PTO payout and the employer miscalculates the balance, the employee may be entitled to back pay plus penalties.
🏦 5. Review and Adjust Payroll Schedules for Holiday Bank Closures
November and December include several banking holidays, and businesses must plan ahead to avoid delayed paychecks.
Important dates:
Thanksgiving Day
Day after Thanksgiving (limited banking hours)
Christmas Eve (early closures)
Christmas Day
New Year’s Eve (possible early closure)
New Year’s Day
What employers MUST do:
Submit payroll earlier than usual
Communicate any adjusted pay dates to employees
Confirm direct deposit processing times
Prepare for reduced staffing during holidays
Why this matters
Missing a cutoff means employees don’t get paid on time — one of the fastest ways to damage trust and morale.
Aquila proactively notifies clients of cutoff changes and handles scheduling adjustments behind the scenes.
📊 6. Run Year-End Payroll Reports & Reconcile Data
Q4 is your last opportunity to ensure payroll and accounting totals match.
Reports to review include:
Wage summaries
Bonus and commission totals
Retirement plan contributions
Employer and employee taxes
HSA/FSA contributions
Garnishment payments
Workers’ comp audit data
Why this matters
Reconciling early allows you to catch:
Missing deductions
Incorrect pay codes
Duplicate entries
Tax discrepancies
This prevents incorrect W-2s and makes January significantly smoother.
🎁 7. Plan Holiday Bonuses Correctly (and Apply the Right Tax Rules)
Holiday bonuses are a great way to reward employees — but they come with important payroll considerations.
Gift Cards
Always taxable. There is no de minimis exception.
Cash Bonuses
Taxed as supplemental wages and may be taxed at a higher flat supplemental tax rate.
Gross-Up Bonuses
If you want employees to receive a fixed net amount, you can “gross up” the bonus to cover taxes — a popular holiday option.
Physical Gifts
Small gifts like merch or a holiday ham may be considered de minimis in some cases, but rules vary and should be reviewed annually.
🧠 8. Update Benefits & Prepare for Open Enrollment Changes
Benefit plans often renew on January 1, making Q4 the time to finalize updates.
Employers must confirm:
New medical, dental, and vision rates
Updated contribution amounts
Dependent coverage tiers
FSA rollover or grace period rules
New IRS contribution limits for HSA/FSA/401(k)
Section 125 POP documentation
Why this matters
Incorrect benefit deductions in January lead to payroll corrections, frustrated employees, and premium reconciliation headaches.
🏛 9. Review Compliance Requirements & New Labor Laws for the New Year
Every year brings new regulations, and Q4 is the time to prepare for them.
What to look for:
State minimum wage increases
New exempt salary thresholds
Updated tax rates or taxable wage bases
Employee classification changes (W-2 vs 1099)
New or updated paid leave requirements
Poster and notice updates
OSHA/EEOC updates
Example
Many states update minimum wage on January 1 — failing to adjust rates in payroll can lead to wage violations and back-pay liability.
📈 10. Set Up for a Strong Start in the New Year
Year-end isn’t just about closing out — it’s about setting up for better efficiency moving forward.
Consider reviewing:
Whether your current payroll provider meets your needs
Manual processes that could be automated
Employee self-service adoption
Time and attendance accuracy
Training or onboarding gaps
Data cleanup opportunities
Businesses that take time in Q4 to streamline their processes enter January with fewer headaches — and more clarity.
🦅 Aquila Payroll Services Makes Year-End Stress-Free
At Aquila Payroll Services, we guide employers through every step of Q4 and year-end preparation, offering:
Accurate and timely W-2 and 1099 processing
Automated ACA reporting
PTO audits and year-end adjustments
Early holiday payroll cutoff alerts
Dedicated, responsive support
Seamless processing through isolved’s modern HRIS system
We make year-end smooth, compliant, and efficient — so your team can focus on celebrating the season and preparing for a successful new year.